{ "_id": "6acb7ff3fe5cc25786e90de6", "Package": "colocalized", "Type": "Package", "Title": "Clusters of Colocalized Sequences", "Version": "0.2.0", "Authors@R": "person(\"Stefan\", \"Golas\", email = \"stefanmgolas@gmail.com\", role = c(\"cre\",\"aut\"))", "Description": "Also abbreviates to \"CCSeq\". Finds clusters of colocalized\nsequences in .bed annotation files up to a specified cut-off\ndistance. Two sequences are colocalized if they are within the\ncut-off distance of each other, and clusters are sets of\nsequences where each sequence is colocalized to at least one\nother sequence in the cluster. For a set of .bed annotation\ntables provided in a list along with a cut-off distance, the\nprogram will output a file containing the locations of each\ncluster. Annotated .bed files are from the 'pwmscan'\napplication at .\nPersonal machines might crash or take excessively long\ndepending on the number of annotated sequences in each file and\nwhether chromsearch() or gensearch() is used.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "6.1.1.9000", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-11 12:21:46 UTC", "User": "root" }, "Author": "Stefan Golas [cre, aut]", "Maintainer": "Stefan Golas ", "Repository": "https://stefangolas.r-universe.dev", "Date/Publication": "2019-10-18 20:20:12 UTC", "RemoteUrl": "https://github.com/cran/colocalized", "RemoteRef": "HEAD", "RemoteSha": "496527ec2f80edd1b0599924bb14e623ed8965b3", "_user": "stefangolas", "_type": "src", "_file": "colocalized_0.2.0.tar.gz", "_fileid": "https://r2.ropensci.org/753ce5423ed48a796f332dc5747f6820b1999ae00d2414df2d9ef851fc7b03b0", "_filesize": 3746988, "_sha256": 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